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@@ -655,6 +655,44 @@ Boost components used include
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and [@../../libs/test/index.html the Test Framework].
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]
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+[blurb [*CBCanaylzer]\n\n
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+[@http://www.biozentrum.uni-wuerzburg.de/index.php?id=524 CBCanaylzer]
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+ is developed by the Department of Bioinformatics,
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+at the University of Wuerzburg.\n\n
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+['"CBCAnalyzer (CBC = compensatory base change) is a tool to create ``small''
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+phylogenetic trees from sequence alignments. To measure the distance of sequences
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+the compensatory base changes are detected and counted. The bionj
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+algorithm is then used to construct a tree. CBCAnalyzer is available on
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+Windows, Linux and partly works on MacOSX. \n\n
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+Boost libraries used:
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+ [@../../libs/program_options/index.html Program Options]
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+ - creates really nice output, and is both easy to extend and simple to handle.
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+ [@../../libs/iterator/index.html Iterator],
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+ [@../../libs/spirit/index.html Spirit]
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+ - Saved a lot of my time, and makes the vast amount of biological file
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+ formats simple to support,
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+ [@../../libs/smart_ptr/index.html Shared Pointer],
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+ [@../../libs/lambda/index.html Lambda].]
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+]
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+
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+[blurb [*Profdist]\n\n
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+[@http://www.biozentrum.uni-wuerzburg.de/index.php?id=523 Profdist]
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+is developed by the Department of Bioinformatics, at the University of Wuerzburg.\n\n
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+['"Profdist is a tool for the construction of large phylogenetic trees based on
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+profile distances. The input alignment data gets extended by random
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+picking of rows, and a clustering technique is used to create profiles
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+of the most frequent subtrees. The iterative approach allows working on
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+large datasets. Currently the application is very limited by the quality of
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+wxWidgets, and only available for Windows and Linux. \n\n
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+The Boost librarie sued were:
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+ [@../../libs/algorithm/string/index.html String Algorithms],
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+ [@../../libs/ref/index.html Ref],
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+ [@../../libs/iterator/index.html Iterator],
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+ [@../../libs/spirit/index.html Spirit],
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+ [@../../libs/smart_ptr/index.html Shared Pointer] and
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+ [@../../libs/lambda/index.html Lambda]."]
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+]
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+
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[endsect]
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[section:inhouse In House Boost]
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@@ -749,6 +787,30 @@ We use the following Boost libraries in approximate order of frequency of use:
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[@../../libs/tokenizer/index.html Tokenizer]."]
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]
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+[blurb [*Rational Discovery LLC]\n\n
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+[@http://www.rationaldiscovery.com Rational Discovery]
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+provides computational modeling, combinatorial
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+library design and custom software development services to the
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+pharmaceutical, biotech and chemical industries.\n\n
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+['"We do a substantial amount of internal research to develop new
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+approaches for applying machine-learning techniques to solve chemical
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+problems. Because we're a small organization and chemistry is a large
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+and complex field, it is essential that we be able to quickly and
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+easily prototype and test new algorithms. We have found the Boost
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+libraries, a reliable source of high-quality code, to be
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+indispensable.\n\n
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+Boost libraries used:
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+[@../../libs/python/index.html Python],
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+[@../../libs/graph/index.html Graph],
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+[@../../libs/smart_ptr/index.html Smart Pointer],
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+[@../../libs/any/index.html Any],
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+[@../../libs/conversion/lexical_cast.htm Lexical Cast],
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+[@../../libs/random/index.html Random],
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+[@../../libs/algorithm/string/index.html String Algorithms],
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+[@../../libs/tuple/index.html Tuple],
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+[@../../libs/numeric/ublas/index.html uBLAS]."]
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+]
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+
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[blurb [*Archelon LLC]\n\n
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[@http://www.archelon-us.com Archelon LLC] is a global securities firm
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headquartered in Chicago. We actively trade equities, futures and
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John Maddock